PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001585.1_g00006.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family E2F/DP
Protein Properties Length: 444aa    MW: 49528.4 Da    PI: 4.8055
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001585.1_g00006.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP86.12.6e-27122187171
                  E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                              r+++sL+llt+kf++l++++e+gi++ln++a++L   +v  ++RRiYDi+NVLe+++liekk kn+i+wkg
  Itr_sc001585.1_g00006.1 122 RYDSSLGLLTKKFINLIRHAEDGILDLNKAADTL---EV--QKRRIYDITNVLEGIGLIEKKLKNRIQWKG 187
                              6899******************************...99..****************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.4E-29120189IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467856.26E-17122185IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.0E-34122187IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.2E-24124187IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146609.07E-45197313No hitNo description
SuperFamilySSF1440743.66E-29199313No hitNo description
PfamPF164211.2E-31202311IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MQQDLKRQQL PFTVVKPPSG DFRRFSADHP RHSPPQQPDD IIVNTPPLKW KSDMVSHSQV  60
PSDQDPSFGY AVNSPMQTPV SGKARKAQRV PRTSKSRRYV SQNAVDDGSP SGNNVTPVGS  120
CRYDSSLGLL TKKFINLIRH AEDGILDLNK AADTLEVQKR RIYDITNVLE GIGLIEKKLK  180
NRIQWKGLDV SRTSDFDGVS NLQAEVEKLM LKERRIDEQI REMQDRLRDL SEDENNKGYC  240
VLGCSSSLWL FVTEEDIKGL PCFQNETLLA IKAPHGTTLE VPDPDEAVDY PQRRYRIILR  300
STMGPIDVYL VSQFEKKLEE INAVDVAPSI HSTSGANENA TAMVETEESR GNEVLQEKET  360
ERVSSNVGTS QDFTSGIMKI VPDVDNEADY WLLSDADVSI TDMWTTELHE DYTTANISTP  420
RAQTPPVAAE TPSAANTAVS LPAV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A2e-25122188774PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006362858.10.0PREDICTED: transcription factor E2FB
RefseqXP_016547862.10.0PREDICTED: transcription factor E2FB isoform X1
RefseqXP_016547863.10.0PREDICTED: transcription factor E2FB isoform X1
SwissprotQ9FV711e-132E2FB_ARATH; Transcription factor E2FB
TrEMBLA0A0V0II580.0A0A0V0II58_SOLCH; Putative transcription factor E2FB-like
STRINGSolyc11g068800.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10772484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22220.21e-133E2F transcription factor 1